Table 2 The mutation test changes: list of variations displayed in structure (nearest residue if in loop/termini region) T19R (20) L452R T478K N501Y D614G P681R (674) D950N
From: The evaluation of SARS-CoV-2 mutations at the early stage of the pandemic in Istanbul population
Query | Clade | Best reference hit | % Id | % Coverage | #Δs | List of aa changes |
|---|---|---|---|---|---|---|
hCoV-19/Türkiye/HSGM-B18999/2021 EPI_ISL_2958617|2021-06-29 | GK | NSP1 hCoV-19/Wuhan/WIV04/2019 | 100 | 100 | 0 | No aa changes |
NSP2 hCoV-19/Wuhan/WIV04/2019 | 99.7 | 100 | 2 | R27C, K81N | ||
NSP3 hCoV-19/Wuhan/WIV04/2019 | 99.9 | 100 | 1 | A488S#o | ||
NSP4 hCoV-19/Wuhan/WIV04/2019 | 100 | 100 | 0 | No aa changes | ||
NSP5 hCoV-19/Wuhan/WIV04/2019 | 100 | 100 | 0 | No aa changes | ||
NSP6 hCoV-19/Wuhan/WIV04/2019 | 99.7 | 100 | 1 | T77A | ||
NSP7 hCoV-19/Wuhan/WIV04/2019 | 100 | 100 | 0 | No aa changes | ||
NSP8 hCoV-19/Wuhan/WIV04/2019 | 100 | 100 | 0 | No aa changes | ||
NSP9 hCoV-19/Wuhan/WIV04/2019 | 100 | 100 | 0 | No aa changes | ||
NSP10 hCoV-19/Wuhan/WIV04/2019 | 100 | 100 | 0 | No aa changes | ||
NSP11 hCoV-19/Wuhan/WIV04/2019 | 100 | 100 | 0 | No aa changes | ||
NSP12 hCoV-19/Wuhan/WIV04/2019 | 99.9 | 99.0 | 1 | P323L#o | ||
NSP13 hCoV-19/Wuhan/WIV04/2019 | 99.8 | 100 | 1 | P77L | ||
NSP14 hCoV-19/Wuhan/WIV04/2019 | 99.8 | 100 | 1 | A394V | ||
NSP15 hCoV-19/Wuhan/WIV04/2019 | 100 | 100 | 0 | No aa changes | ||
NSP16 hCoV-19/Wuhan/WIV04/2019 | 100 | 100 | 0 | No aa changes | ||
Spike hCoV-19/Wuhan/WIV04/2019 | 99.5 | 100 | 7 | T19R, L452R$#a, T478K$#rao, N501Y$#rao, D614G$#lo, P681R$, D950N#o | ||
NS3 hCoV-19/Wuhan/WIV04/2019 | 99.6 | 100 | 1 | S26L | ||
E hCoV-19/Wuhan/WIV04/2019 | 100 | 100 | 0 | No aa changes | ||
M hCoV-19/Wuhan/WIV04/2019 | 99.5 | 100 | 1 | I82T | ||
NS6 hCoV-19/Wuhan/WIV04/2019 | 100 | 100 | 0 | No aa changes | ||
NS7a hCoV-19/Wuhan/WIV04/2019 | 98.3 | 100 | 2 | V82A$, T120I | ||
NS7b hCoV-19/Wuhan/WIV04/2019 | 97.7 | 100 | 1 | T40I | ||
NS8 hCoV-19/Wuhan/WIV04/2019 | 100 | 97.5 | 0 | No aa changes | ||
N hCoV-19/Wuhan/WIV04/2019 | 99.0 | 100 | 4 | D63G$#o, R203M, G215C, D377Y |